rs1675389 chr19:40570843 C>G
- Sequence
aacttcaggccctccagcaggtgg[C/G]ggtagtaggtggggccagagctgg
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma) A549 (lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN KLF10_HUMAN SP2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.96 | -0.06 | 1.83 | -5.86 | Concordant | |||
| STAG1_HUMAN | 3.69 | -3.57 | 1.00 | n/a | n/a | |||
| KLF10_HUMAN | 1.29 | n/a | 4.00 | n/a | n/a | |||
| SP2_HUMAN | 1.16 | n/a | 4.00 | 1.42 | Weak Discordant | |||
| KLF9_HUMAN | 1.38 | n/a | 5.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction