rs167679 chr7:95684258 A>G

Sequence
caaaagagatattccatgattaaa[A/G]tggcccctacaggacaaattgaga
ASB in cell types
THP-1 (acute monocytic leukemia) pancreas HeLa S3 (cervical adenocarcinoma) GM12890 (Lymphoblastoid Cell Lines)
ASB for transcription factors
CTCF_HUMAN RAD21_HUMAN REST_HUMAN SMC3_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.32 2.03 1.001.4·10-94 1.69 2.41 Concordant
RAD21_HUMAN 0.19 2.52 1.002.0·10-22 1.44 n/a n/a
REST_HUMAN -3.25 3.26 1.007.1·10-4 1.25 n/a No Hit
SMC3_HUMAN 0.18 2.76 0.794.2·10-3 2.75 n/a n/a
TCF21_HUMAN -4.25 2.41 1.000.02 1.50 n/a n/a
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Motif analysis

CTCF_HUMAN Concordant
CTCF_HUMAN pic

Genetic associations

GRASP abnormal involuntary movement scale college completion tardive dyskinesia
GTEx eQTL Adipose_Subcutaneous Heart_Atrial_Appendage Muscle_Skeletal Nerve_Tibial

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