rs1684621 chr16:4660897 T>G
- Sequence
cactctggcaagcccaggtgtctg[T/G]ggtatccctcagacggctgggagc
- ASB in cell types
- MOLT-4 (Adult T acute lymphoblastic leukemia) CTV-1 (Adult T acute lymphoblastic leukemia) J-Lat A72
- ASB for transcription factors
- CDK9_HUMAN SMCA4_HUMAN FLI1_HUMAN ETS1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CDK9_HUMAN | 3.53 | -2.54 | 1.00 | n/a | n/a | |||
| SMCA4_HUMAN | 1.86 | 0.23 | 1.00 | n/a | n/a | |||
| FLI1_HUMAN | 2.39 | -2.06 | 1.00 | n/a | No Hit | |||
| ETS1_HUMAN | 1.45 | -1.24 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood