ADASTRA v5.1.3
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rs16862777
chr2:221490753
G
>
C
Sequence
ggttataaggaagagtcaacagtt[G/C]ggatgcattacgttttgactctga
ASB in cell types
HEK293T (embryonic kidney)
ASB for transcription factors
PKNX1_HUMAN
SCRT2_HUMAN
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View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PKNX1_HUMAN
n/a
2.63
1.00
4.3·10
-4
2.00
n/a
No Hit
SCRT2_HUMAN
2.19
-1.85
0.03
1.00
1.00
n/a
n/a
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP
ldl cholesterol
,
total cholesterol
,
years of education
GTEx eQTL
Brain_Cerebellar_Hemisphere
,
Brain_Cerebellum
,
Whole_Blood
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)