rs16865656 chr1:39691588 C>A
- Sequence
gcccggccgcaggagcgcgccccg[C/A]ctgcccgcgctgaccttcccggag
- ASB for transcription factors
- RBM25_HUMAN RFX1_HUMAN PBX2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | 2.74 | -4.97 | 2.00 | n/a | n/a | |||
| RFX1_HUMAN | 0.52 | -0.49 | 1.00 | 2.37 | Discordant | |||
| PBX2_HUMAN | -3.44 | 2.18 | 1.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Heart_Left_Ventricle, Lung, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood