rs16910246 chr12:14770413 C>A

Sequence
atccgatacgtgcttatgggccaa[C/A]gactcggccgcttagaagaccatg
ASB in cell types
BJAB (Burkitt lymphoma) 22RV1 (prostate carcinoma)
ASB for transcription factors
SPT5H_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPT5H_HUMAN 2.38 0.77 1.7·10-31.00 1.25 n/a n/a
ANDR_HUMAN 3.16 n/a 2.9·10-31.00 2.00 n/a No Hit
Items per page:
1 – 2 of 2

Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Esophagus_Mucosa,  Skin_Sun_Exposed_Lower_leg,  Thyroid

Download