rs16935963 chr10:78459252 T>A
- Sequence
ggccttcattttgcaaaaacatga[T/A]agtaaacccaaatgcaaatgtgaa
- ASB in cell types
- HepG2 (hepatoblastoma) HUVEC-C (HUVEC, umbilical vein endothelial cells)
- ASB for transcription factors
- TF65_HUMAN NOTC1_HUMAN TYY1_HUMAN NCOR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | 2.06 | n/a | 3.00 | n/a | No Hit | |||
| NOTC1_HUMAN | 1.82 | n/a | 3.00 | n/a | n/a | |||
| TYY1_HUMAN | 2.82 | n/a | 1.00 | n/a | No Hit | |||
| NCOR1_HUMAN | -2.11 | 2.60 | 1.00 | n/a | n/a | |||
| TCF7_HUMAN | -4.24 | 2.47 | 1.50 | 6.27 | Concordant |
Items per page:
1 – 5 of 8
Motif analysis
