rs16937997 chr11:44538644 G>A
- Sequence
cccagacggccgtttcagagacaa[G/A]ggcgacacctgctggagataagtg
- ASB in cell types
- WA01 (H1, human embryonic stem cells) WA09 (embryonic stem cells) MS-1 (Small cell lung carcinoma) GM19193 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.45 | 0.51 | 1.24 | -2.31 | Concordant | |||
| RAD21_HUMAN | 2.18 | -0.23 | 1.29 | n/a | n/a | |||
| STAG1_HUMAN | 0.90 | -0.33 | 1.08 | n/a | n/a |
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Motif analysis
