rs169412 chr17:19948562 G>T
- Sequence
ctgcagtcccaagaagaagaagtc[G/T]tggccacagaggttgacatagcta
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) T47D (invasive ductal carcinoma)
- ASB for transcription factors
- ETS1_HUMAN PRGR_HUMAN SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ETS1_HUMAN | 3.12 | -3.00 | 1.00 | n/a | No Hit | |||
| PRGR_HUMAN | -0.60 | 1.62 | 1.28 | 2.38 | Concordant | |||
| SPI1_HUMAN | 1.42 | 0.45 | 1.00 | -1.34 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood