rs17040817 chr3:15171303 C>T

Sequence
ctgtgtccacatagtttcaaggtc[C/T]gtatctgctttgatctgtgaaaaa
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) breast tumor
ASB for transcription factors
FOXK2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXK2_HUMAN 1.81 -0.32 0.041.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP body mass index (bmi),  fasting insulin,  homa-b,  homa-ir,  serum creatinine
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Breast_Mammary_Tissue,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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