rs17096119 chr5:149656779 G>A
- Sequence
cagtttctggcactgccacatgag[G/A]gcactgttgaaaagaagctactct
- ASB in cell types
- foreskin keratinocyte 2588 (Lymphoblastoid Cell Lines) GM18505 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.54 | -0.99 | 2.56 | -4.67 | Concordant | |||
| STAG1_HUMAN | 1.14 | -0.70 | 1.11 | n/a | n/a |
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Motif analysis
