rs171109 chr20:49307221 A>G
- Sequence
gtctaaccttgacagagattaatg[A/G]ctccattatcttcctaggctatca
- ASB in cell types
- SNU-16 (Gastric adenocarcinoma)
- ASB for transcription factors
- HNF4A_HUMAN STAT3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HNF4A_HUMAN | 2.88 | n/a | 3.00 | n/a | No Hit | |||
| STAT3_HUMAN | 2.32 | -1.95 | 1.50 | n/a | No Hit |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood