rs17139985 chr6:5261370 T>C
- Sequence
cgggatttcaagggtgacttgatt[T/C]cgcctgatcctggtcggcagggtg
- ASB in cell types
- HepG2 (hepatoblastoma) iPS-derived chondrocytes HCT-116 (colon carcinoma) LNCaP C4-2B (prostate carcinoma)
- ASB for transcription factors
- TYY1_HUMAN ZFX_HUMAN CTCF_HUMAN RARA_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | n/a | 4.34 | 2.00 | n/a | No Hit | |||
| ZFX_HUMAN | 0.06 | 2.14 | 1.00 | n/a | No Hit | |||
| CTCF_HUMAN | -0.06 | 1.17 | 1.87 | n/a | No Hit | |||
| RARA_HUMAN | 0.69 | 0.29 | 1.06 | n/a | No Hit | |||
| HCFC1_HUMAN | 1.48 | n/a | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Pancreas, Thyroid, Whole_Blood