rs17162855 chr1:1764392 C>T
- Sequence
atgcaaagcccggggcgctgttgc[C/T]caagcagcattgtgcaagggtgag
- ASB in cell types
- CD14+ monocytes MDM(monocyte derived macrophages) HepG2 (hepatoblastoma) tibial nerve
- ASB for transcription factors
- CEBPA_HUMAN STAT1_HUMAN TF65_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPA_HUMAN | n/a | 2.62 | 1.50 | 0.69 | Weak Concordant | |||
| STAT1_HUMAN | n/a | 2.52 | 3.00 | n/a | No Hit | |||
| TF65_HUMAN | n/a | 3.00 | 2.50 | n/a | No Hit | |||
| CTCF_HUMAN | 0.35 | 1.23 | 1.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Brain_Cortex, Colon_Transverse, Esophagus_Mucosa, Lung, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid