rs17173 chr7:104884019 T>C
- Sequence
atggaatcacacagacaaggcttc[T/C]gggtctagccctgcctcgtaaaac
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) VCaP (prostate carcinoma) monocytes from periferal blood
- ASB for transcription factors
- ELF1_HUMAN E4F1_HUMAN SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF1_HUMAN | -3.04 | 3.15 | 1.25 | 5.90 | Concordant | |||
| E4F1_HUMAN | -3.30 | 2.24 | 1.50 | n/a | n/a | |||
| SPI1_HUMAN | 0.20 | 1.23 | 1.40 | n/a | No Hit |
Items per page:
1 – 3 of 3
Motif analysis
