rs171773 chr5:115602062 C>A
- Sequence
tggccccagcccaccccgcgcccc[C/A]ggcggcggcccccgccctagcgcc
- ASB in cell types
- GBM39 (Human brain tumor) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- REQU_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| REQU_HUMAN | n/a | 2.30 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 1.27 | 0.57 | 1.40 | 3.04 | Discordant |
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Motif analysis
