ADASTRA v5.1.3
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rs171854
chr19:58155435
C
>
T
Sequence
gtgattcactttccagaggcccct[C/T]agtgccccgacgctggcccggagg
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
GM12892 (female B-cells lymphoblastoid cell line)
foreskin keratinocyte
ASB for transcription factors
STAG1_HUMAN
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View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
T
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAG1_HUMAN
1.26
0.28
1.3·10
-3
1.00
1.28
n/a
n/a
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GRASP
advanced age-related macular degeneration
,
advanced age-related macular degeneration (choroidal neovascularization) vs. no amd
,
advanced age-related macular degeneration (geographic atrophy)
,
cystatin c in serum
,
hdl cholesterol
,
systolic blood pressure (sbp)
,
total cholesterol
GTEx eQTL
Brain_Cerebellar_Hemisphere
,
Skin_Not_Sun_Exposed_Suprapubic
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)