rs17256505 chr12:76348538 A>G
- Sequence
tgcccttctgtccgcctggtggaa[A/G]agccctgcagctttgccaggtggg
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) MDA-MB-231 (breast adenocarcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- PKNX1_HUMAN BRD2_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | 0.77 | 0.33 | 1.50 | n/a | No Hit | |||
| BRD2_HUMAN | 0.36 | 1.17 | 1.05 | n/a | n/a | |||
| CTCF_HUMAN | 0.36 | 0.91 | 1.29 | 1.34 | Weak Concordant |
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Motif analysis
