rs17293632 chr15:67150258 C>T
- Sequence
gttttatctctctagccggtgact[C/T]ataattaaggaagtcaaaactgtg
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) GM12878 (female B-cells lymphoblastoid cell line) BIN-67 (Ovarian small cell carcinoma, hypercalcemic type)
- ASB for transcription factors
- JUN_HUMAN ARI1B_HUMAN EP300_HUMAN IKZF1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 2.30 | -0.16 | 1.05 | -4.68 | Concordant | |||
| ARI1B_HUMAN | 2.53 | n/a | 2.00 | n/a | n/a | |||
| EP300_HUMAN | 2.94 | -4.69 | 1.17 | n/a | n/a | |||
| IKZF1_HUMAN | 2.14 | -1.09 | 1.50 | n/a | No Hit | |||
| KDM1A_HUMAN | 1.70 | n/a | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
EMBL-EBI asthma, chronic inflammatory diseases (ankylosing spondylitis, crohns disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy), crohns disease, eosinophil counts, inflammatory bowel disease, ulcerative colitis
GRASP crohns disease, infant head circumference, inflammatory bowel disease, ldl cholesterol, rheumatoid arthritis, ulcerative colitis