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rs172998 chr4:2798802 A>T

Sequence
ggcctcaggcgttcccaggctgag[A/T]cctctaggaacacaggtgctgggt
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) MDA-MB-134 (invasive lobular breast carcinoma)
ASB for transcription factors
ESR1_HUMAN CLOCK_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 0.20 1.47 1.005.8·10-11 2.10 n/a No Hit
CLOCK_HUMAN -3.77 1.47 1.000.04 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP college completion hdl cholesterol rheumatoid arthritis total cholesterol waist hip ratio years of education
GTEx eQTL Cells_Cultured_fibroblasts Thyroid Whole_Blood

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