rs17344537 chr1:205122299 T>G
- Sequence
ttgtccgggcgggctacctcagac[T/G]ccgcaggaaaggttccggacaagt
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HepG2 (hepatoblastoma) thymus-derived CD34+ cells thymus-derived CD34- cells
- ASB for transcription factors
- RBBP5_HUMAN BC11B_HUMAN ZN444_HUMAN JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBBP5_HUMAN | 2.52 | n/a | 2.00 | n/a | n/a | |||
| BC11B_HUMAN | 2.44 | 0.05 | 2.00 | n/a | n/a | |||
| ZN444_HUMAN | 0.62 | n/a | 2.00 | n/a | n/a | |||
| JUN_HUMAN | 0.34 | 1.03 | 1.82 | n/a | No Hit | |||
| SUMO1_HUMAN | 2.42 | -0.53 | 1.00 | n/a | n/a |
Items per page:
1 – 5 of 8
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood