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rs17347 chr20:5119563 G>C

Sequence
ggcgggccggggccggcttcccgg[G/C]gccgcgaggctcacctggtgaggt
ASB in cell types
HEK293 (embryonic kidney) 22RV1 (prostate carcinoma) Th1-cells
ASB for transcription factors
ANDR_HUMAN TBX21_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.95 n/a 7.7·10-31.00 2.00 n/a No Hit
TBX21_HUMAN 1.71 -0.74 0.031.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous Artery_Aorta Artery_Tibial Brain_Cerebellar_Hemisphere Breast_Mammary_Tissue Cells_Cultured_fibroblasts Esophagus_Mucosa Nerve_Tibial Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Thyroid

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