ADASTRA v5.1.3
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Bill Cipher
. You can switch to the latest ADASTRA version:
adastra.autosome.org
rs17347
chr20:5119563
G
>
C
Sequence
ggcgggccggggccggcttcccgg[G/C]gccgcgaggctcacctggtgaggt
ASB in cell types
HEK293 (embryonic kidney)
22RV1 (prostate carcinoma)
Th1-cells
ASB for transcription factors
ANDR_HUMAN
TBX21_HUMAN
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View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN
2.95
n/a
7.7·10
-3
1.00
2.00
n/a
No Hit
TBX21_HUMAN
1.71
-0.74
0.03
1.00
1.00
n/a
No Hit
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL
Adipose_Subcutaneous
,
Artery_Aorta
,
Artery_Tibial
,
Brain_Cerebellar_Hemisphere
,
Breast_Mammary_Tissue
,
Cells_Cultured_fibroblasts
,
Esophagus_Mucosa
,
Nerve_Tibial
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Thyroid
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)