rs17369088 chr1:179365666 C>A
- Sequence
gaagacccttgcttaacccgcgtg[C/A]gtcacgggctacaggggtcggccc
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) MOLM14 (Adult acute myeloid leukemia) 226LDM (normal breast luminal cells) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ATF7_HUMAN ZBT7A_HUMAN CDK8_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF7_HUMAN | -2.06 | 2.42 | 1.00 | n/a | n/a | |||
| ZBT7A_HUMAN | 1.96 | -1.63 | 1.00 | n/a | No Hit | |||
| CDK8_HUMAN | 1.81 | -0.69 | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | 1.38 | 0.88 | 1.28 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood