rs173915 chrX:120485956 C>T
- Sequence
aactgggcccggctggcgcgcctt[C/T]aggcacgtgggtctgggttgcgga
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HEK293T (embryonic kidney) HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- TYY1_HUMAN CLOCK_HUMAN ZFX_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 2.94 | -5.27 | 2.00 | n/a | No Hit | |||
| CLOCK_HUMAN | 3.06 | n/a | 2.00 | -4.36 | Concordant | |||
| ZFX_HUMAN | 1.92 | -3.45 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic