rs1752022 chr1:15245030 T>C
- Sequence
gagatcacatgatgagagaggaag[T/C]gagagtgagcgagggggaggtgcc
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) CTV-1 (Adult T acute lymphoblastic leukemia) germinal center B-cells
- ASB for transcription factors
- SPI1_HUMAN MITF_HUMAN BCL6_HUMAN RAD51_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.72 | -0.49 | 1.43 | -4.09 | Concordant | |||
| MITF_HUMAN | 3.19 | 0.06 | 1.25 | n/a | No Hit | |||
| BCL6_HUMAN | 1.80 | -0.26 | 1.79 | n/a | No Hit | |||
| RAD51_HUMAN | 2.10 | -1.23 | 1.00 | n/a | n/a | |||
| ZN143_HUMAN | 2.54 | -2.58 | 1.00 | n/a | No Hit |
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Motif analysis
