rs17529722 chr2:26412574 G>A
- Sequence
gtctataatctggaactttatctc[G/A]ccaccgcccctttagtctcatttt
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF2_HUMAN VEZF1_HUMAN MNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | 2.49 | -2.03 | 1.00 | n/a | n/a | |||
| VEZF1_HUMAN | 1.62 | -4.21 | 2.00 | -0.90 | Weak Concordant | |||
| MNT_HUMAN | 1.30 | -4.06 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP adiponectin levels, advanced age-related macular degeneration, advanced age-related macular degeneration (geographic atrophy), bipolar disorder in alcoholics, total cholesterol, type 2 diabetes
GTEx eQTL Artery_Tibial, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Muscle_Skeletal, Pancreas, Testis, Whole_Blood