rs1755085 chr10:31962003 T>C
- Sequence
ggaacgtatctgagtcatgcagca[T/C]caaagtatgtgagcagtggaagtt
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) SUM159PT (Triple negative breast cancer) adrenal gland
- ASB for transcription factors
- SMCA4_HUMAN SPI1_HUMAN ETS1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMCA4_HUMAN | 2.75 | 0.70 | 1.00 | n/a | n/a | |||
| SPI1_HUMAN | 1.67 | -0.01 | 1.28 | n/a | No Hit | |||
| ETS1_HUMAN | 2.42 | -1.04 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood