rs17554909 chr19:1095431 T>G
- Sequence
ccgcctaaccccgccccgcgctgg[T/G]ctgtcgtcggcgaatgcctgaatg
- ASB in cell types
- iPS-derived chondrocytes iPS-derived dermal fibroblasts CTV-1 (Adult T acute lymphoblastic leukemia) MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- RARA_HUMAN SMCA4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RARA_HUMAN | 0.36 | 0.56 | 1.03 | n/a | No Hit | |||
| SMCA4_HUMAN | 0.69 | 1.48 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Uterus