rs1756549 chr14:20613585 A>C
- Sequence
tcggcaagaatgcgtacttatttg[A/C]atagtagaggtaaaccacacgccc
- ASB in cell types
- HepG2 (hepatoblastoma) foreskin keratinocyte CyT49-derived endodermal cells GM10847 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- FOXA1_HUMAN FOXA2_HUMAN TEAD3_HUMAN TBX3_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.04 | 1.62 | 1.74 | 4.19 | Concordant | |||
| FOXA2_HUMAN | -0.12 | 1.62 | 1.56 | 4.41 | Concordant | |||
| TEAD3_HUMAN | n/a | 1.95 | 2.00 | n/a | n/a | |||
| TBX3_HUMAN | -4.05 | 1.64 | 2.00 | n/a | No Hit | |||
| STAG1_HUMAN | 1.04 | 0.18 | 1.04 | n/a | n/a |
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Motif analysis
