rs17565579 chr1:171142336 C>G

Sequence
gctgccagctctgaaatgtatttt[C/G]aaggcagcacattgtgtgcacttt
ASB in cell types
22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.48 -0.69 4.8·10-31.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  aortic valve calcium,  chronic kidney disease
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Aorta,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Hippocampus,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Thyroid

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