rs1759187 chr1:16633319 C>T
- Sequence
tcattcccaggccggcctcctgga[C/T]agctcccctcccagctgcagcggg
- ASB in cell types
- HepG2 (hepatoblastoma) SH-SY5Y (neuroblastoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- SMHD1_HUMAN ANDR_HUMAN ITF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMHD1_HUMAN | 2.31 | -1.96 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | 1.97 | -0.81 | 2.50 | n/a | No Hit | |||
| ITF2_HUMAN | 2.19 | -1.70 | 1.50 | -5.17 | Concordant |
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Motif analysis
