rs1759403 chr9:6681229 G>C
- Sequence
ctggggcggcagcccgctaggttc[G/C]cctgactcactaaatgctactaca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) CD14+ monocytes keratinocytes SUM159PT (Triple negative breast cancer)
- ASB for transcription factors
- STAT1_HUMAN SNAI2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | -1.11 | 2.31 | 3.00 | n/a | No Hit | |||
| SNAI2_HUMAN | -0.34 | 1.23 | 1.50 | n/a | No Hit |
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