rs176107 chr5:90096845 A>G
- Sequence
gagtgtgagtgtcagatttgagga[A/G]tcttagatacaggagttgtgttat
- ASB in cell types
- K562 (myelogenous leukemia) BEAS-2B (bronchial epithelium) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- ATF3_HUMAN GCR_HUMAN KDM1A_HUMAN TCF21_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF3_HUMAN | 2.92 | n/a | 2.00 | n/a | No Hit | |||
| GCR_HUMAN | 1.60 | -0.25 | 2.00 | n/a | No Hit | |||
| KDM1A_HUMAN | 2.44 | n/a | 2.00 | n/a | n/a | |||
| TCF21_HUMAN | 2.08 | n/a | 2.00 | n/a | n/a | |||
| HDAC1_HUMAN | 2.28 | -1.03 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, decrease in fev1/fvc ratio (in nonasthmatic participants), late onset alzheimers disease, ldl cholesterol, lung function, ratio of forced expiratory volume in 1 second (fev1) to forced vital capacity (fvc) (fev1/fvc) ratio percent predicted (in nonasthmatic participants), schizophrenia