rs17628 chr19:39435869 A>C

Sequence
caccttgcgtccgaagacctgcac[A/C]gactgcagcgggcccttggacggc
ASB in cell types
K562 (myelogenous leukemia) WA09 (embryonic stem cells) GM12878 (female B-cells lymphoblastoid cell line) HCT-116 (colon carcinoma)
ASB for transcription factors
GABPA_HUMAN ILF3_HUMAN TP53B_HUMAN NELFE_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GABPA_HUMAN 1.92 -0.37 1.6·10-71.00 1.76 n/a No Hit
ILF3_HUMAN 3.76 n/a 8.3·10-61.00 2.00 n/a n/a
TP53B_HUMAN 2.10 -1.10 1.9·10-41.00 1.00 n/a n/a
NELFE_HUMAN 3.08 -5.59 4.2·10-31.00 2.00 n/a n/a
HEY1_HUMAN 2.50 -2.08 0.021.00 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Artery_Aorta Artery_Tibial Brain_Cerebellum Brain_Cortex Brain_Nucleus_accumbens_basal_ganglia Breast_Mammary_Tissue Cells_Cultured_fibroblasts Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Lung Minor_Salivary_Gland Muscle_Skeletal Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Small_Intestine_Terminal_Ileum Spleen Stomach Testis Thyroid Whole_Blood

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