rs17653344 chr5:172420670 T>C

Sequence
tcagtctccacccttattgacttc[T/C]tgggtggagcagggaccccggcaa
ASB in cell types
HepG2 (hepatoblastoma) K562 (myelogenous leukemia)
ASB for transcription factors
PBX2_HUMAN NFYC_HUMAN RBM25_HUMAN CEBPB_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PBX2_HUMAN n/a 1.74 1.002.6·10-7 2.00 n/a No Hit
NFYC_HUMAN -2.33 2.33 1.007.0·10-6 1.00 n/a No Hit
RBM25_HUMAN 1.57 0.69 4.5·10-51.00 1.50 n/a n/a
CEBPB_HUMAN 0.40 2.85 0.787.2·10-5 1.83 n/a No Hit
CEBPZ_HUMAN -1.62 1.95 0.980.02 1.00 n/a n/a
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Motif analysis

GABPA_HUMAN Concordant
GABPA_HUMAN pic

Genetic associations

GRASP 2 hour glucose,  body mass index (bmi),  ldl cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

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