rs17658686 chr22:30424089 C>G
- Sequence
gatcagggcactaaggatgctccc[C/G]acggccttcacagtgacggcggag
- ASB in cell types
- HEK293 (embryonic kidney) fetal bone marrow-derived mononuclear cells adult erythroblasts
- ASB for transcription factors
- HCFC1_HUMAN ZN394_HUMAN KMT2A_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HCFC1_HUMAN | 1.54 | n/a | 2.50 | n/a | n/a | |||
| ZN394_HUMAN | 1.11 | n/a | 2.00 | n/a | No Hit | |||
| KMT2A_HUMAN | n/a | 3.51 | 1.50 | n/a | n/a | |||
| CTCF_HUMAN | 0.74 | 0.91 | 1.15 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood