rs1769257 chr9:94603438 T>C

Sequence
gaactcgagcacgtcgtcggggga[T/C]cccaagatcaccggcgccctctgg
ASB in cell types
WA09 (embryonic stem cells) 22RV1 (prostate carcinoma) GM12890 (Lymphoblastoid Cell Lines) renal cortex
ASB for transcription factors
CTCF_HUMAN RAD21_HUMAN CREB1_HUMAN STAG1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.34 0.88 9.6·10-141.00 1.33 n/a No Hit
RAD21_HUMAN 2.27 -0.06 1.5·10-91.00 1.86 n/a n/a
CREB1_HUMAN 1.92 -0.30 6.9·10-41.00 1.00 n/a No Hit
STAG1_HUMAN 0.77 -0.69 0.021.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Colon_Transverse,  Esophagus_Muscularis,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Stomach,  Testis,  Thyroid,  Whole_Blood

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