rs178513 chr11:44066165 T>G
- Sequence
aacaggcctggaagcccaacccgg[T/G]gcggaccgccctcagtctcctagt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia) GM12892 (female B-cells lymphoblastoid cell line) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CTCF_HUMAN TYY1_HUMAN KDM6A_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.06 | 0.50 | 1.49 | n/a | No Hit | |||
| TYY1_HUMAN | 2.01 | 0.13 | 2.00 | n/a | No Hit | |||
| KDM6A_HUMAN | 2.90 | -5.13 | 2.00 | n/a | n/a | |||
| STAG1_HUMAN | 1.63 | 0.88 | 1.00 | n/a | n/a | |||
| TRI22_HUMAN | 1.79 | -1.41 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Colon_Sigmoid, Esophagus_Muscularis, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid