rs17875920 chr1:11740966 T>C
- Sequence
cctgagcaagttccttcctgtctg[T/C]ggtccagggtttactatcagatgg
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- ARI1B_HUMAN ETV1_HUMAN EP400_HUMAN REQU_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARI1B_HUMAN | -1.49 | 1.49 | 1.00 | n/a | n/a | |||
| ETV1_HUMAN | -1.92 | 1.92 | 1.00 | n/a | No Hit | |||
| EP400_HUMAN | -3.21 | 3.37 | 1.00 | n/a | n/a | |||
| REQU_HUMAN | -0.70 | 1.99 | 1.00 | n/a | n/a | |||
| SKI_HUMAN | -2.38 | 2.05 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Esophagus_Mucosa, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood