rs17885963 chr19:18058639 C>G
- Sequence
ggggtgggatttcaggagcccccc[C/G]ccacacctcggctcagaccgcagt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM18505 (female B-cells Lymphoblastoid Cell Lines) pancreas CD34+ stem cells-derived erythroblasts
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN SMC1A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.03 | 0.21 | 1.21 | n/a | No Hit | |||
| STAG1_HUMAN | 0.66 | -0.77 | 1.11 | n/a | n/a | |||
| SMC1A_HUMAN | 2.24 | -2.06 | 1.00 | n/a | n/a |
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