rs179150 chr14:95516117 C>T
- Sequence
cgaaactgagcattcggggttgga[C/T]ttcccctcttcgccgcctgctctg
- ASB in cell types
- EOL-1 (Acute myeloid leukemia) breast tumor naive IgD+ B cells adrenal gland
- ASB for transcription factors
- CTCF_HUMAN STAT1_HUMAN FOXP1_HUMAN SMRC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.85 | 0.42 | 1.23 | n/a | No Hit | |||
| STAT1_HUMAN | 1.34 | 0.18 | 1.40 | n/a | No Hit | |||
| FOXP1_HUMAN | 2.12 | -0.94 | 2.00 | n/a | No Hit | |||
| SMRC1_HUMAN | 2.27 | n/a | 1.00 | n/a | n/a | |||
| SRF_HUMAN | -1.82 | 2.33 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Vagina, Whole_Blood