rs1800539 chr22:29603795 C>A
- Sequence
gtgccctccctgcagccgtcaggg[C/A]ccgtcccccaactcccctttccgc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) brain prefrontal cortex region tissues HeLa (cervical adenocarcinoma)
- ASB for transcription factors
- ZN143_HUMAN OLIG2_HUMAN NFXL1_HUMAN INT11_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN143_HUMAN | 2.31 | -2.01 | 1.00 | n/a | No Hit | |||
| OLIG2_HUMAN | -2.00 | 2.37 | 1.00 | n/a | No Hit | |||
| NFXL1_HUMAN | -2.22 | 2.19 | 1.00 | n/a | n/a | |||
| INT11_HUMAN | 0.59 | 1.71 | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid