rs1864112 chr19:17338152 A>C
- Sequence
cggccacgccctccgaattctcac[A/C]gcaccccgagacctgccccttgct
- ASB in cell types
- HEK293 (embryonic kidney)
- ASB for transcription factors
- SP3_HUMAN ZN600_HUMAN KLF8_HUMAN ZEB2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SP3_HUMAN | n/a | 4.03 | 2.00 | n/a | No Hit | |||
| ZN600_HUMAN | n/a | 2.50 | 2.00 | n/a | n/a | |||
| KLF8_HUMAN | n/a | 3.65 | 2.00 | n/a | No Hit | |||
| ZEB2_HUMAN | n/a | 3.42 | 2.00 | n/a | n/a | |||
| ZN189_HUMAN | n/a | 2.68 | 2.00 | n/a | n/a |
Items per page:
1 – 5 of 14
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood