rs1867895 chr2:133818516 G>A
- Sequence
acaggcgtgggcaccgtgctctgc[G/A]tgcatgatgacatatctgcaattc
- ASB in cell types
- BEAS-2B (bronchial epithelium) HEK293 (embryonic kidney) A549 (lung carcinoma) HCT-116 (colon carcinoma)
- ASB for transcription factors
- GCR_HUMAN ARNT_HUMAN ZN639_HUMAN GATA3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 1.10 | 0.64 | 1.10 | n/a | No Hit | |||
| ARNT_HUMAN | 2.21 | -0.20 | 1.67 | -6.20 | Concordant | |||
| ZN639_HUMAN | 2.98 | n/a | 1.00 | n/a | n/a | |||
| GATA3_HUMAN | 2.82 | -5.34 | 2.00 | n/a | No Hit | |||
| EP300_HUMAN | 1.39 | 0.12 | 1.56 | n/a | n/a |
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Motif analysis
