ADASTRA v5.1.3
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rs1868600
chr2:174335399
A
>
C
Sequence
cgtgatttataccccatcccccgc[A/C]ttgctttggggattttgttgcaat
ASB in cell types
Hs68 (Canavan disease)
K562 (myelogenous leukemia)
ASB for transcription factors
PCGF2_HUMAN
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View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PCGF2_HUMAN
-0.90
1.53
1.00
0.04
1.00
n/a
n/a
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GTEx eQTL
Colon_Sigmoid
,
Muscle_Skeletal
,
Nerve_Tibial
,
Prostate
,
Thyroid
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)