ADASTRA v5.1.3
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rs1873612
chr12:40158649
C
>
G
Sequence
agcacctctcagttccacttctta[C/G]tcaagaagttcctcttcttgctca
ASB in cell types
SUM159PT (Triple negative breast cancer)
THP-1 (acute monocytic leukemia)
macrophages form periferal blood
ASB for transcription factors
CEBPB_HUMAN
SPI1_HUMAN
CEBPA_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CEBPB_HUMAN
1.47
-0.21
7.8·10
-5
1.00
1.50
n/a
No Hit
SPI1_HUMAN
1.24
0.32
4.1·10
-4
1.00
1.39
n/a
No Hit
CEBPA_HUMAN
1.41
-0.48
1.7·10
-3
1.00
1.07
n/a
No Hit
Items per page:
5
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GRASP
advanced age-related macular degeneration
,
advanced age-related macular degeneration (geographic atrophy)
,
body mass index (bmi)
,
fasting insulin
,
hdl cholesterol change with statins
,
homa-ir
,
microalbuminuria
,
rheumatoid arthritis
,
urinary albumin-to-creatinine ratio
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Artery_Tibial
,
Brain_Caudate_basal_ganglia
,
Brain_Nucleus_accumbens_basal_ganglia
,
Breast_Mammary_Tissue
,
Cells_Cultured_fibroblasts
,
Cells_EBV-transformed_lymphocytes
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Muscle_Skeletal
,
Pancreas
,
Pituitary
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Spleen
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)