ADASTRA v5.1.3
Search
Browse
Annotate
Help
Downloads
About
rs1874774
chr1:55277624
T
>
G
Sequence
atgtgtgtgtgagatgatcttcgc[T/G]ctctgactctggatcttatatcgc
ASB in cell types
GM19239 (male B-cells lymphoblastoid cell line)
CD34+ stem cells-derived erythroblasts
GM10847 (female B-cells Lymphoblastoid Cell Lines)
CD14+ monocytes
ASB for transcription factors
CTCF_HUMAN
STAG1_HUMAN
SCRT1_HUMAN
STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
Reset
hidden submit
Filter
Get TSV
Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN
0.84
0.79
7.0·10
-5
1.00
1.41
n/a
No Hit
STAG1_HUMAN
0.58
0.20
4.4·10
-3
1.00
1.00
n/a
n/a
SCRT1_HUMAN
n/a
2.48
1.00
0.04
2.00
n/a
n/a
STAT1_HUMAN
-0.19
2.06
0.81
0.05
2.00
n/a
No Hit
Items per page:
5
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GRASP
cystatin c in serum
,
ldl cholesterol
,
total cholesterol
,
weight in type 2 diabetes
Download
Download page in JSON
Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
Please enable JavaScript to continue using this application.
Switch release
SNP set annotation with ANANASTRA
Sort
+/-100bp
log2-scale
log2(Alt/Ref motif p-value)