rs1875099 chr3:177596881 A>C
- Sequence
cttaaaggtttactcagatgttga[A/C]agaagcatccaaagtcatattttc
- ASB in cell types
- LNCaP (prostate carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.63 | 2.45 | 1.50 | 3.75 | Concordant | |||
| ANDR_HUMAN | -0.55 | 3.82 | 1.75 | 1.91 | Weak Concordant |
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Motif analysis
