rs1888464 chr21:37221160 G>T
- Sequence
gcgcgaggcccgggcgcccgagcg[G/T]cgattccctcccctatcaccagct
- ASB in cell types
- GM19193 (female B-cells Lymphoblastoid Cell Lines) MS-1 (Small cell lung carcinoma) GM19099 (female B-cells Lymphoblastoid Cell Lines) primary B-CLL cells
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN BRD4_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.41 | 2.15 | 1.33 | n/a | No Hit | |||
| STAG1_HUMAN | -1.80 | 1.96 | 1.27 | n/a | n/a | |||
| BRD4_HUMAN | 2.46 | -0.27 | 2.60 | n/a | n/a | |||
| ESR1_HUMAN | 2.26 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Uterus, Whole_Blood