rs189854 chr5:9046917 C>G
- Sequence
cacagtcctgatcactcactcact[C/G]actcacaaccacctcaacttttca
- ASB in cell types
- HCASMC (Human coronary artery smooth muscle cells) MCF10A (breast epithelial cells) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- JUND_HUMAN JUN_HUMAN GCR_HUMAN TEAD4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUND_HUMAN | n/a | 3.17 | 1.33 | 3.50 | Concordant | |||
| JUN_HUMAN | -4.77 | 3.00 | 1.17 | 4.29 | Concordant | |||
| GCR_HUMAN | -0.80 | 2.21 | 2.71 | n/a | No Hit | |||
| TEAD4_HUMAN | -1.79 | 2.08 | 1.00 | n/a | No Hit |
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Motif analysis
